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Table 2 List of referred proteins and gene models

From: Acclimatory responses of the Daphnia pulex proteome to environmental changes. II. Chronic exposure to different temperatures (10 and 20°C) mainly affects protein metabolism

Putative function

Symbol

Model name

Protein ID

Reference ID

Trypsin

TRY1

PIR_PASA_GEN_1500076

347826

301879

Trypsin

TRY2

PIR_PASA_GEN_5300037

347779

306771

Trypsin

TRY3

PIR_PASA_GEN_6100026

347764

307264

Trypsin

TRY4A

PIR_fgenesh1_pg.C_scaffold_23000179

347804

102943

Trypsin

TRY4B

PIR_estExt_fgenesh1_kg.C_230008

347242

230885

Trypsin

TRY5A

PIR_PASA_GEN_4200081

347777

305924

Trypsin

TRY5B

PIR_NCBI_GNO_4200123

347775

321745

Trypsin

TRY5C

PIR_NCBI_GNO_4200124

347774

106429

Trypsin

TRY5D

PIR_estExt_fgenesh1_kg.C_420021

347772

231151

Trypsin

TRY5E

PIR_NCBI_GNO_4200126

347773

321748

Trypsin

TRY5F

PIR_SNAP_00016212

347771

231152

Trypsin

TRY5G

PIR_NCBI_GNO_4200130

347770

248155

Trypsin

TRY5H

PIR_PASA_GEN_4200082

347769

305925

Trypsin

TRY5I

PIR_PASA_GEN_4200034

347768

305886

Trypsin

TRY5J

PIR_PASA_GEN_4200035

347765

305887

Trypsin

TRY5K

PIR_estExt_fgenesh1_kg.C_850001

347782

231482

Trypsin

TRY5L

PIR_NCBI_GNO_8500013

347781

59836

Trypsin

TRY5M

PIR_NCBI_GNO_24500018

347780

65745

Chymotrypsin

CHY1A

PIR_PASA_GEN_2900126

347760

304512

Chymotrypsin

CHY1B

PIR_NCBI_GNO_2900206

347750

319507

Chymotrypsin

CHY1C

PIR_NCBI_GNO_2900207

347751

52244

Chymotrypsin

CHY1D

PIR_PASA_GEN_2900062

347749

52244

Chymotrypsin

CHY1E

PIR_PASA_GEN_2900063

347752

304463

Chymotrypsin

CHY1F

PIR_NCBI_GNO_2900210

347753

26258

Chymotrypsin

CHY1G

PIR_PASA_GEN_2900130

347754

304515

Chymotrypsin

CHY1H

PIR_estExt_fgenesh1_kg.C_290019

347757

231027

Endoribonuclease

ERNA

PIR_PASA_GEN_12200001

347694

301221

Endoribonuclease

ERNB

PIR_PASA_GEN_6000032

347697

307196

Astacin

ACN2

PIR_NCBI_GNO_18200007

347841

93694

Peptidase M13

 

estExt_Genewise1Plus.C_750105

200882

200882

Peptidase M2

 

PASA_GEN_6000071

307230

307230

Carboxylesterase, type B

 

PASA_GEN_25200006

304160

304160

Sphingomyelin phosphodiesterase

 

PASA_GEN_2900053

304453

304453

Sphingomyelin phosphodiesterase

 

PASA_GEN_13800028

301526

301526

Carboxypeptidase A

CPA1A

estExt_Genewise1Plus.C_150058

195011

195011

Carboxypeptidase A

CPA1B

NCBI_GNO_1500041

315693

315693

Vitellogenin

VTG1

BDE_estExt_Genewise1.C_9580001

299677

219769

Vitellogenin

VTG2

PIR_estExt_fgenesh1_pg.C_9580001

347667

229959

Vitellogenin

VTG2

PIR_estExt_fgenesh1_pg.C_470029

347678

226075

Vitellogenin

VTG3

estExt_fgenesh1_pg.C_470021

226068

226068

Vitellogenin

VTG4

PASA_GEN_8300068

308693

308693

Actin

ACT1A

PIR_PASA_GEN_0400163

347740

305550

Actin

ACT1B

estExt_fgenesh1_pg.C_1190006

228751

301040

Actin

ACT1C

PIR_PASA_GEN_0500107

347742

306442

Actin

ACT1D

PIR_fgenesh1_pm.C_scaffold_66000006

347743

129328

Actin

ACT2A

PIR_PASA_GEN_0100278

347739

300012

Actin

ACT2B

PIR_estExt_Genewise1Plus.C_20413

347736

190689

Actin

ACT2C

PIR_e_gw1.2.692.1

347703

40361

Myosin

MHC-1

PIR_7_PIR_NCBI_GNO_0600448

347733

192727

Myosin

PMY

PIR_estExt_Genewise1.C_2380001

347700

219409

HSP90

 

PASA_GEN_17300027

302452

302452

Pyruvate kinase

 

NCBI_GNO_29900007

334106

334106

AAA+ ATPase

 

PASA_GEN_8000045

308570

308570

α-Amylase

AMY

FRA_PASA_GEN_2100059

347603

303445

Exo-β-1,3-glucanase

EXG5

PIR_PASA_GEN_1000289

347606

300436

Cellubiohydrolase

CEL7A

PIR_PASA_GEN_1000209

347598

300366

Endo-β-1,4-glucanase

CEL9A

PIR_estExt_fgenesh1_kg.C_70001

347602

230437

β-1,3-glucan-binding protein

 

PASA_GEN_0200102

303036

303036

Endo-β-1,4-mannanase

MAN5A

PIR_PASA_GEN_8600009

347627

308762

Enolase

ENO

PIR_PASA_GEN_1500033

347595

301844

  1. Putative functions and symbolic names of identified proteins are given in relation to gene model names and protein identification numbers of those loci which were referred to in the present study. DappuDraft protein IDs in bold type indicate manually curated gene models that may differ from those contained in the 'Filtered Models v1.1' set (released by the Joint Genome Institute in July 2007). The Reference DappuDraft gene ID can be used to retrieve the corresponding models from the Filtered Models set.