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Table 2 Functional categories and genes regulated in Atlantic salmon reared at high temperature for 21 and 56 days identified from microarray analysis

From: Cardiac responses to elevated seawater temperature in Atlantic salmon

Probe number Name (best blast hit) Day 21 Day 56
Unfolded protein response
CA356940 Heat shock protein 47 kDa 1,15 1,35
CA373890 Heat shock protein HSP 90-beta-1 0,66 0,67
EST1-3A_F08 Heat shock protein HSP 90-beta-2 0,83 0,80
EXOB1_E03 Eukaryotic translation initiation factor 3 subunit 5 0,55 0,30
EXOB1_E08 Eukaryotic translation initiation factor 3 subunit 6-1 0,44 0,35
CA382570 Mitogen-activated protein kinase 13 0,29 0,57
EST1-3A_H06 Transcription factor jun-B-1 0,43 1,02
CA368716 Membrane-bound transcription factor site 2 protease 0,58 0,36
CA378435 Protein phosphatase 2C delta isoform 0,62 0,23
Tissue remodeling and cytoskeleton
est03c04 Matrix metalloproteinase-9 0,34 0,51
EXOB3_H01 Matrix metalloproteinase-13 0,47 0,81
CA378743 Fibronectin precursor 0,44 0,29
utu04c11 Collagen alpha 1(I) chain-2 -0,32 -0,95
HK0003_C02 Collagen alpha 1(I) chain-1 -0,16 -0,51
utu02b11 Collagen a3(I)-2 -0,29 -0,56
utu02a06 Collagen a3(I)-1 -0,22 -0,41
HKT0001_B03 Alpha 2 type I collagen-1 -0,54 -0,91
HK0003_E07 Myosin light chain 2-1 -0,50 -0,73
utu02c02 Myosin heavy chain 1-1 -0,51 -0,54
utu04f06 Myosin heavy chain 1-2 -0,64 -0,95
HK0002_F05 Myosin heavy chain, fetal -0,56 -0,50
HK0002_B06 Troponin T-3 -0,81 -0,67
HK0003_D01 Troponin C-1 -0,71 -0,17
HKT0001_E07 Actin, alpha 1 -0.39 -0.71
utu04d04 Actin, alpha 4 -0.13 -0.67
utu04f08 Actin, alpha 5 -0.58 -1.27
HK0003_C08 Parvalbumin alpha-2 -0,78 -0,65
est01e10 Tolloid-like protein (nephrosin)-1 -0,74 -0,47
Energy metabolism
HKT0001_H05 Cytochrome b-3 0,32 0,41
utu02b07 Cytochrome c oxidase subunit II 0,59 0,44
HK0001_G02 ATP synthase beta chain-2 -0,43 -0,71
HK0002_G02 Creatine kinase, sarcomeric mitochondrial precursor -0,41 -0,63
est03a08 Cytochrome c-1 -0,66 -0,99
HK0003_B03 Cytochrome c-2 -0,91 -1,16
EXOB1_C10 Cytochrome P450 2 K4-2 -0,94 -1,39
HK0002_A12 NADH-ubiquinone oxidoreductase 15 kDa subunit -0,45 -0,43
Heme biosynthesis
EXOB2_B10 Hemoglobin beta chain Omy 30073 -0,54 -1,64
HST0001_C04 Hemoglobin alpha chain Omy 11839 -0,96 -1,56
EXOB4_H06 Alpha-globin 1-3 Omy 8146 -0,76 -1,41
HST0001_C02 Alpha-globin I-1 Omy 11839 -0,18 -0,97
utu01e09 Embryonic alpha-type globin2 + collagen alpha 2(1) -0,43 -0,68
HST0001_D08 Beta-globin Omy 9744 -0,79 -1,06
est01g04 5-aminolevulinate synthase 0,08 -0,52
CA381045 Aminolevulinate, delta-, synthase 1 -0,84 -1,23
HK0001_D09 Cytochrome P450 2 F1 -0,87 -1,15
Immune response
EXOB1_F11 CD9 0,45 0,36
CA388403 CD9-like 0,20 0,54
CA378736 Tyrosine-protein kinase BTK 0,44 0,29
CA382425 B-cell translocation gene 1-2 0,49 0,42
EXOB4_C11 High affinity immunoglobulin γ Fc receptor I precursor 0,47 0,39
CA362806 Gamma-interferon inducible lysosomal thiol reductase 0,51 0,17
CA355488 Tapasin-2 0,40 0,45
CA373659 Mannan-binding lectin serine protease 2-2 0,25 0,46
ENH2_B05 Acute phase protein 0,41 0,53
CA370329 Lysozyme C precursor 0,87 0,61
CA362419 Complement component C6 0,47 0,40
HK0001_F01 Complement factor H-1 -0,82 -0,73
CA370696 Complement control protein factor I-B -0,71 0,23
EXOB1_E12 Serine protease-like protein-3 -0,34 -0,53
EST1-3A_A09 Serine protease-like protein-2 -0,42 -0,65
EXOB3_B01 Cathepsin C-3 -0,90 -1,30
CA377504 Cold autoinflammatory syndrome 1 protein -0,81 -0,62
HK0002_G10 T-cell receptor α chain V region HPB-MLT precursor (Fr) -0,91 -0,52
CA372428 Leukotriene B4 receptor 1 -1,11 -0,82
HK0002_G11 Myristoylated alanine-rich protein kinase C substrate -1,07 -0,87
EXOB2_G01 Leukocyte cell-derived chemotaxin 2 -0,97 -0,86
CA343700 CXC chemokine receptor transcript variant B -0,52 -0,88
CA361151 Annexin A1-2 -0,58 -0,47
  1. Expression values are log2-expression ratios (19°C versus 14°C) from analysis of pooled heart samples (per temperature treatment: 3 fish per triplicate tanks, n = 9).