Table 2 List of primers used for the qPCR reactions
From: Disease resistance is related to inherent swimming performance in Atlantic salmon
Genes | Short name | Sequence 5' to 3' | Accession |
|---|---|---|---|
radical S-adenosyl methionine domain-containing protein 2 1 | Rsad2 | F-GTACCGCAGATGCACAACAC | AF076620 |
R-TTGACACTGCTTGGAGTTGC | |||
interferon inducible protein Gig1 1 | Gig1 | F-GGCAACCTGAATCCAGAAGA | DW569595 |
R-GTCTGGACGCAGACTGATGA | |||
VHSV-inducible protein 1 | Vhsv2 | F-GGTGAAGACCTGGACCTGAA | BT072288 |
R-TGACCCCTGTTGACCTTCTC | |||
interferon-induced protein with tetratricopeptide repeats 5 1 | Ifit5 | F-CAGAGAGGTGCCAGGCTAAC | BT046021 |
R-TGCACATTGACTCTCCTTGG | |||
interferon induced with helicase C domain 1 1 | Mda5 | F-CAGAGGTGGGGTTCAATGAT | NM001195179 |
R-AGCTCGCTCCACTTGTTGAT | |||
DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide RIG-I 1 | Rig-I | F-GACGGTCAGCAGGGTGTACT | DY714827 |
R-CCCGTGTCCTAACGAACAGT | |||
barrier-to-autointegration factor 1 | Baf | F-ACAGACCCCTCATCATCCTG | BT049316 |
R-CGGTGCTTTTGAGAAGTGGT | |||
signal transducer and activator of transcription 1 isoform alpha 1 | Stat1a | F-CGGTGGAGCCCTACACTAAG | CB513054 |
R-GGGATCCTGGGGTAGAGGTA | |||
interferon-inducible protein Gig2-like 1 | Gig2 | F-GATGTTTCATGGCTGCTCAA | BT044026 |
R-CTTTTCGGATGTCCCGACTA | |||
B-type natriuretic peptide 2 | BNP | F-TCGACAAATCCGCAATAAGA | CK883650 |
R-TTGAGCCAATTCGGTCTAGC | |||
putative collagen alpha 1 2 | put_Coll-a1 | F-AACCCTGAACCCCTCAGTCT | CA038317 |
R-TGGTCCTACCGTCTGGTTTC | |||
leukocyte elastase inhibitor 2 | LEI | F-TCTCAGATGGCAAAGGCTCT | BT045959 |
R-GTTGGCCAGTTTCAGGATGT | |||
elongation factor 1a 3 | EF1α | F-CACCACGGGCCATCTGATCTACAA | BT072490 |
R-TCAGCAGCCTCCTTCTCGAACTTC | |||
18S rRNA 3 | 18S | F-GCCCTATCAACTTTCGATGGTAC | AJ427629 |
R-TTTGGATGTGGTAGCCGTTTCTC | |||
infectious pancreatic necrosis virus_polyprotein 4 | IPNV | F-CCGACCGAGAACAT | AJ877117 |
R-TGACAGCTTGACCCTGGTGAT |