Table 2 Mouse bladder transcripts isolated by SSHs
From: The inflammatory and normal transcriptome of mouse bladder detrusor and mucosa
Abbrev | Name | Accession | Library | QPCR |
|---|---|---|---|---|
2310015N07 | RIKEN cDNA 2310015N07 gene | NM_025515 | MIDI | N |
Actg1 | actin, gamma 1, cytoplasmic | NM_009609 | MIC | N |
Actg2 | actin, gamma 2, smooth muscle, enteric | NM_009610 | MIDI | N |
Actr3 | ARP3 actin-related protein 3 homolog (yeast) | NM_023735 | MIC | N |
Ambladder | adult male urinary bladder cDNA, RIKEN clone:9530014P05 | AK020558 | MC | N |
Amcq | adult male corpora quadrigemina cDNA, RIKEN clone:B230340L02 | AK080832 | MIC | Y |
Aplp2 | amyloid beta (A4) precursor-like protein 2 isoform 751 | U15571 | MIDI | N |
Bcap31 | B-cell receptor-associated protein 31 | NM_012060 | MIDI | Y |
Calm2 | calmodulin 2 | NM_007589 | MC | N |
Catenin | similar to catenin src | BC043108 | MIC | N |
Cnn1 | calponin 1 | NM_009922 | MC | N |
Col3a1 | collagen, type III, alpha 1, RIKEN 3200002K15 | AK019448 | MIDI | N |
Cox7b | cytochrome c oxidase subunit VIIb | NM_025379 | MIC | N |
CoxI | mitochondrial gene for subunit I of cytochrome c oxidase | X57780 | MIC | N |
Cpe | carboxypeptidase E (Cpe), | NM_013494 | MIC | N |
Cts e | cathepsin E (Ctse) | NM_007799 | MIC | N |
Cts h | cathepsin H | NM_007801 | DC | N |
Cts l | cathepsin L | NM_009984 | MIC | Y |
Ddx3 | DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3 | NM_010028 | MIDI | Y |
DnaJ | Hsp40 homolog, subfamily A, member 2 | NM_019794 | MIDI | N |
Eif4ebp2 | eukaryotic translation initiation factor 4E binding protein 2 | NM_010124 | DIC | N |
Elp3 | elongation protein 3 homolog, RIKEN clone:2610507P14 | AK012072 | MIDI | Y |
Endomuc1 | endomucin-1 | BC003706 | MIC | N |
Fth1 | ferritin heavy chain 1 | NM_010239 | MIC | N |
Gpam/GPAT | glycerol-3-phosphate acyltransferase | NM_008149 | MIC | Y |
Grn | epithelin 1 and 2 (granulin) | X62321 | MC | N |
Grp58 | glucose regulated protein | BC003285 | MIC | Y |
Gst a4 | glutathione S-transferase, alpha 4 | NM_010357 | MIDI | N |
Gst m1 | glutathione S-transferase, mu 1 | NM_010358 | DC | Y |
Gst o1 | glutathione S-transferase omega 1 | NM_010362 | DC | Y |
Gus | beta-glucuronidase | NM_010368 | MIDI | N |
IFIT3 | interferon-induced protein with tetratricopeptide repeats 3 | BC003804 | MIC | Y |
Ifrg15 | interferon alpha responsive gene | NM_022329 | DC | N |
Lamp2 | lysosomal membrane glycoprotein 2 | NM_010685 | MIC | N |
Lrrfip2 | leucine rich repeat (in FLII) interacting protein 2 | XM_284541 | MIDI | Y |
Ly6d | mRNA for THB / lymphocyte antigen 6 complex, locus D | X63782 | MIDI | N |
Mafb | transcription factor MAFB | AF180338 | MIC | N |
Mgs1-182e11 | clone mgs1-182e11 strain 129/SvJ | AC096622 | MIDI | Y |
MLZE | adult female vagina cDNA, RIKEN clone 9930109F21 | AK037079 | MIDI | N |
Mpp1 | palmytoylated protein p55 | U38196 | DIC | N |
My h11 | myosin heavy chain 11, smooth muscle | XM_147228 | MIDI | Y |
My lc2b/MRLC2 | myosin light chain, regulatory B | NM_023402 | MC | Y |
My19 | myosin, light polypeptide 9, regulatory | XM_283793 | MIDI | N |
Pls3 | similar to plastin 3 precursor (T-isoform) | NM_145629 | MIC | Y |
Prdx1 | peroxiredoxin 1 | NM_011034 | MIDI | N |
Prnp | prion protein | NM_011170 | DC | Y |
Prss11 | protease, serine, 11 (Igf binding) HtrA1 | NM_019564 | MIC | N |
RP23-452N23 | clone RP23-452N23 on chromosome 4 | AL928645 | MIC | N |
RP23-70M6 | chromosome 18 clone RP23-70M6 | AC114820 | MIC | N |
RPCI23 | Strain C57BL6/J Chromosome 2, clone RP23-111A22 | AC078911 | MIDI | Y |
RPs21 | ribosomal protein S21 / RIKEN cDNA 2410030A14 gene | BC027563 | MIC | N |
RPs7 | ribosomal protein S7 | NM_011300 | MIDI | Y |
SAC1 | suppressor of actin mutations | AJ245720 | MC | Y |
SC1 | extracellular matrix protein precursor | U77330 | MC | N |
SCP-1 | SCP-1 mRNA for stromal cell derived protein-1 | D16847 | MIC | Y |
Sdfr1 | stromal cell derived factor receptor 1 | NM_009145 | DC | N |
Sepp1/SePP | selenoprotein P, plasma,1 glycoprotein | NM_009155 | MIC | Y |
Serpina3n | serine (or cysteine) proteinase inhibitor (clade A, member 3N) | NM_009252 | DC | Y |
Sf 3b2 | splicing factor 3b, subunit 2, clone MGC:61326 IMAGE:6812422 | BC049118 | MIDI | N |
Sf rs6 | splicing factor, arginine/serine-rich 6 | NM_026499 | MIC | N |
Sf sc35 | splicing factor SC35 | AF077858 | MIDI | N |
Sirt1 | Sir1 alpha protein | AF214646 | MIDI | N |
Siva | Cd27 binding proapoptotic protein | NM_013929 | DIC | Y |
Smoc2 | SPARC related modular calcium binding 2 | NM_022315 | MIC | N |
Sparc | secreted acidic cysteine rich glycoprotein | NM_009242 | MIDI | N |
Sprr 2A | small proline-rich protein 2A | BC010818 | MC | Y |
Syn1 | synapsin I or ribosomal protein S15a | NM_013680 | DIC | Y |
Tcra-V13.1 | T-cell receptor alpha/delta locus | AE008684 | MIC | N |
Thsd6 | thrombospondin, type I domain containing 6 | NM_025629 | DC | Y |
TMPRSS2 | transmembrane protease, serine 2 | NM_015775 | MIDI | N |
Tnnt3 | troponin T3, skeletal, fast | NM_011620 | MIDI | N |
UDP-gluco | UDP-glucuronosyltransferase 1 family, member 2 | BC019434 | MIC | N |
Upk1a | uroplakin 1a | AF262335 | DC | N |
Upk1b | uroplakin 1b | NM_178924 | DC | N |
Wdr1 | WD repeat domain 1 | NM_011715 | MIDI | N |
Zfp364 | zinc finger protein 364/Rab7 | NM_026406 | MIDI | N |