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Table 2 List of referred proteins and gene models

From: Acclimatory responses of the Daphnia pulex proteome to environmental changes. II. Chronic exposure to different temperatures (10 and 20°C) mainly affects protein metabolism

Putative function Symbol Model name Protein ID Reference ID
Trypsin TRY1 PIR_PASA_GEN_1500076 347826 301879
Trypsin TRY2 PIR_PASA_GEN_5300037 347779 306771
Trypsin TRY3 PIR_PASA_GEN_6100026 347764 307264
Trypsin TRY4A PIR_fgenesh1_pg.C_scaffold_23000179 347804 102943
Trypsin TRY4B PIR_estExt_fgenesh1_kg.C_230008 347242 230885
Trypsin TRY5A PIR_PASA_GEN_4200081 347777 305924
Trypsin TRY5B PIR_NCBI_GNO_4200123 347775 321745
Trypsin TRY5C PIR_NCBI_GNO_4200124 347774 106429
Trypsin TRY5D PIR_estExt_fgenesh1_kg.C_420021 347772 231151
Trypsin TRY5E PIR_NCBI_GNO_4200126 347773 321748
Trypsin TRY5F PIR_SNAP_00016212 347771 231152
Trypsin TRY5G PIR_NCBI_GNO_4200130 347770 248155
Trypsin TRY5H PIR_PASA_GEN_4200082 347769 305925
Trypsin TRY5I PIR_PASA_GEN_4200034 347768 305886
Trypsin TRY5J PIR_PASA_GEN_4200035 347765 305887
Trypsin TRY5K PIR_estExt_fgenesh1_kg.C_850001 347782 231482
Trypsin TRY5L PIR_NCBI_GNO_8500013 347781 59836
Trypsin TRY5M PIR_NCBI_GNO_24500018 347780 65745
Chymotrypsin CHY1A PIR_PASA_GEN_2900126 347760 304512
Chymotrypsin CHY1B PIR_NCBI_GNO_2900206 347750 319507
Chymotrypsin CHY1C PIR_NCBI_GNO_2900207 347751 52244
Chymotrypsin CHY1D PIR_PASA_GEN_2900062 347749 52244
Chymotrypsin CHY1E PIR_PASA_GEN_2900063 347752 304463
Chymotrypsin CHY1F PIR_NCBI_GNO_2900210 347753 26258
Chymotrypsin CHY1G PIR_PASA_GEN_2900130 347754 304515
Chymotrypsin CHY1H PIR_estExt_fgenesh1_kg.C_290019 347757 231027
Endoribonuclease ERNA PIR_PASA_GEN_12200001 347694 301221
Endoribonuclease ERNB PIR_PASA_GEN_6000032 347697 307196
Astacin ACN2 PIR_NCBI_GNO_18200007 347841 93694
Peptidase M13   estExt_Genewise1Plus.C_750105 200882 200882
Peptidase M2   PASA_GEN_6000071 307230 307230
Carboxylesterase, type B   PASA_GEN_25200006 304160 304160
Sphingomyelin phosphodiesterase   PASA_GEN_2900053 304453 304453
Sphingomyelin phosphodiesterase   PASA_GEN_13800028 301526 301526
Carboxypeptidase A CPA1A estExt_Genewise1Plus.C_150058 195011 195011
Carboxypeptidase A CPA1B NCBI_GNO_1500041 315693 315693
Vitellogenin VTG1 BDE_estExt_Genewise1.C_9580001 299677 219769
Vitellogenin VTG2 PIR_estExt_fgenesh1_pg.C_9580001 347667 229959
Vitellogenin VTG2 PIR_estExt_fgenesh1_pg.C_470029 347678 226075
Vitellogenin VTG3 estExt_fgenesh1_pg.C_470021 226068 226068
Vitellogenin VTG4 PASA_GEN_8300068 308693 308693
Actin ACT1A PIR_PASA_GEN_0400163 347740 305550
Actin ACT1B estExt_fgenesh1_pg.C_1190006 228751 301040
Actin ACT1C PIR_PASA_GEN_0500107 347742 306442
Actin ACT1D PIR_fgenesh1_pm.C_scaffold_66000006 347743 129328
Actin ACT2A PIR_PASA_GEN_0100278 347739 300012
Actin ACT2B PIR_estExt_Genewise1Plus.C_20413 347736 190689
Actin ACT2C PIR_e_gw1.2.692.1 347703 40361
Myosin MHC-1 PIR_7_PIR_NCBI_GNO_0600448 347733 192727
Myosin PMY PIR_estExt_Genewise1.C_2380001 347700 219409
HSP90   PASA_GEN_17300027 302452 302452
Pyruvate kinase   NCBI_GNO_29900007 334106 334106
AAA+ ATPase   PASA_GEN_8000045 308570 308570
α-Amylase AMY FRA_PASA_GEN_2100059 347603 303445
Exo-β-1,3-glucanase EXG5 PIR_PASA_GEN_1000289 347606 300436
Cellubiohydrolase CEL7A PIR_PASA_GEN_1000209 347598 300366
Endo-β-1,4-glucanase CEL9A PIR_estExt_fgenesh1_kg.C_70001 347602 230437
β-1,3-glucan-binding protein   PASA_GEN_0200102 303036 303036
Endo-β-1,4-mannanase MAN5A PIR_PASA_GEN_8600009 347627 308762
Enolase ENO PIR_PASA_GEN_1500033 347595 301844
  1. Putative functions and symbolic names of identified proteins are given in relation to gene model names and protein identification numbers of those loci which were referred to in the present study. DappuDraft protein IDs in bold type indicate manually curated gene models that may differ from those contained in the 'Filtered Models v1.1' set (released by the Joint Genome Institute in July 2007). The Reference DappuDraft gene ID can be used to retrieve the corresponding models from the Filtered Models set.